Metadata-Version: 1.1
Name: tnseq-transit
Version: 2.0.2
Summary: TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions.
Home-page: https://github.com/mad-lab/transit
Author: Michael A. DeJesus
Author-email: mad@cs.tamu.edu
License: GNU GPL
Download-URL: https://github.com/mad-lab/transit
Description: # TRANSIT 2.0
        
        
        **New in Version 2.0+**
         - Support for Tn5 datasets.
         - New analysis methods.
         - New way to export normalized datasets.
        
        **Version 2.0.2 changes (August, 2016)**
        - Added support for for custom primers in TPP.
        - Added support for annotations in GFF3 format.
        - Ability to specify pseudocounts in resampling.
        - Misc. Bug fixes
        - **New [mailing list](https://groups.google.com/forum/#!forum/tnseq-transit/join)**
        
        
        
        Welcome! This is the distribution for the TRANSIT and TPP tools developed by the Ioerger Lab.
        
        TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions.
        
        
        
        ## Mailing List
        
        You can join our mailing list to get announcements of new versions, discuss any bugs, or request features! Just head over to the following site and enter your email address:
        
        https://groups.google.com/forum/#!forum/tnseq-transit/join
        
        
        
        
        ## Instructions
        
        For full instructions on how to install and run TRANSIT (and the optional pre-processor, TPP), please see the documentation included in this distribution ("doc" folder) or visit the following web page:
        
        
        http://saclab.tamu.edu/essentiality/transit/transit.html
        
        
        ## Datasets
        
        The TRANSIT distribution comes with some example .wig files in the data/ directory, as well as an example annotation file (.prot\_table format) in the genomes/ directory. Additional genomes may be found on the following website:
        
        http://saclab.tamu.edu/essentiality/transit/genomes/
        
        
        ## Copyright Information
        
        Source code for TRANSIT and TPP are available open source under the terms of the GNU General Public License (Version 3.0) as published by the Free Software Foundation. For more information on this license, please see the included LICENSE.md file or visit their website at:
        
        http://www.gnu.org/licenses/gpl.html
        
Keywords: tnseq,analysis,biology,genome
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Programming Language :: Python :: 2.7
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
