LocalAlignmentStringKernel.cpp File Reference

Go to the source code of this file.

Defines
#define	NAA   20 /* Number of amino-acids */
#define	NLET   26 /* Number of letters in the alphabet */
#define	BINDEX(i, j)   (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2))
#define	SCALING   0.1 /* Factor to scale all SW parameters */
#define	LOGP(x, y)   LogSum(x,y)
#define	LOG0   -10000 /* log(0) */
#define	INTSCALE   1000.0 /* critical for speed and precise computation*/

---

Define Documentation

#define BINDEX	(		i,
			j
	)		(((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2))

Definition at line 67 of file LocalAlignmentStringKernel.cpp.

#define INTSCALE   1000.0 /* critical for speed and precise computation*/

Definition at line 90 of file LocalAlignmentStringKernel.cpp.

#define LOG0   -10000 /* log(0) */

Definition at line 89 of file LocalAlignmentStringKernel.cpp.

#define LOGP	(		x,
			y
	)		LogSum(x,y)

Definition at line 81 of file LocalAlignmentStringKernel.cpp.

#define NAA   20 /* Number of amino-acids */

Definition at line 35 of file LocalAlignmentStringKernel.cpp.

#define NLET   26 /* Number of letters in the alphabet */

Definition at line 36 of file LocalAlignmentStringKernel.cpp.

#define SCALING   0.1 /* Factor to scale all SW parameters */

Definition at line 73 of file LocalAlignmentStringKernel.cpp.